Sub-network GSA

This script executes GSA R module.
See Gene-Level SAM page for gene-level expression value.
Usage: Rscript subnet_gsa.r [input] [gene-level expression value] [response type] [FDR cutoff] [output]
Example: Rscript subnet_gsa.r GSE14407.gmt GSE14407_xg.csv "Two class unpaired" 0.01 GSE14407_out.gmt

Last edited Feb 1, 2013 at 8:02 PM by yongkeecho, version 2

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