Convert

This tool converts Entrez gene ids to gene symbols in a gene set file or vice versa.
Usage : convert [OPTION]
Options:
    -m           mode (0: id to symbol, 1: symbol to id)
    -i           input file
    -o           output file
Example: convert -m 1 -i input.gmt -o output.gmt

Input

Output

Subnet236	17.9005898844578	ACTN1	CDKN2B	MAOA	KAT2B	CLIC5
Subnet2075	17.6456303198903	ACTN1	CD36	CD44	CDKN2B	NR5A2	MAOA	CXCL12	KAT2B	PRMT5	CLIC5	CCR2
Subnet3772	17.5759931268305	ACTN1	CA2	CD36	CD44	CDKN2B	MAOA	RGS2	CXCL12	KAT2B	CLIC5	CCR2
...

Last edited Feb 8, 2013 at 5:54 AM by yongkeecho, version 2

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